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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
93
single cell RNA-seq
72
total RNA-seq
48
ATAC-seq
30
DNase-seq
8
WGBS
8
snATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
154
DNA binding
Target of assay
63
histone
63
histone modification
63
transcription factor
37
broad histone mark
26
control
26
narrow histone mark
16
RNA binding protein
10
chromatin remodeller
Date released
57
April, 2019
27
December, 2018
21
May, 2019
18
January, 2019
15
November, 2018
6
February, 2021
5
June, 2019
5
October, 2019
Available data
153
bam
128
bed narrowPeak
128
bigWig
118
bigBed narrowPeak
60
fastq
6
tagAlign
Organism
154
Homo sapiens
Biosample type
83
tissue
66
cell line
5
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
154
AMP
Genome assembly (visualization)
128
hg19
127
GRCh38
Lab
154
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
tissue
heart left ventricle
35
heart
14
heart right ventricle
13
right atrium auricular region
10
right cardiac atrium
6
+ See 1 more…
cell line
GM12878
60
smooth muscle cell of the coronary artery
6
primary cell
cardiac fibroblast
5
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