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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
93
single cell RNA-seq
68
total RNA-seq
48
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
162
Transcription
149
DNA binding
75
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
62
transcription factor
61
histone
61
histone modification
37
broad histone mark
24
control
24
narrow histone mark
15
RNA binding protein
10
chromatin remodeller
Date released
92
August, 2021
66
February, 2021
57
April, 2019
36
February, 2023
27
December, 2018
27
June, 2019
21
May, 2019
20
July, 2019
18
January, 2019
15
November, 2018
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
1
January, 2018
Available data
259
bam
229
bigWig
199
bed narrowPeak
164
tsv
142
bigBed narrowPeak
60
fastq
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
401
Homo sapiens
Biosample type
273
tissue
127
cell line
primary cell
1
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
340
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
401
AMP
Genome assembly (visualization)
270
GRCh38
233
hg19
Lab
401
AMP-T2D consortium
Audit category:
1
inconsistent control
biosample_type!
primary cell
BIOSAMPLE
ASSAY
401 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
3
4
1
1
1
coronary artery
5
1
36
2
heart
14
1
4
18
1
1
1
heart right ventricle
13
17
1
1
2
1
1
right cardiac atrium
6
18
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
in vitro differentiated cells
cardiac fibroblast
1
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