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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
36
DNase-seq
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
126
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
23
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
67
October, 2019
32
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
5
July, 2019
3
February, 2020
Available data
166
bam
143
bigWig
138
bed narrowPeak
138
bigBed narrowPeak
60
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
182
Homo sapiens
Biosample type
114
tissue
60
cell line
8
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
174
AMP
8
T1D
Genome assembly (visualization)
142
GRCh38
142
hg19
Lab
174
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
182 results
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ChIP-seq
DNase-seq
snATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
5
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 3 more…
cell line
GM12878
60
primary cell
peripheral blood mononuclear cell
8
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