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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
32
DNase-seq
8
snATAC-seq
7
ATAC-seq
4
Hi-C
3
total RNA-seq
1
WGBS
Assay category
67
DNA binding
47
DNA accessibility
4
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
7
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
October, 2019
32
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
Available data
106
bam
98
bed narrowPeak
94
bigWig
92
bigBed narrowPeak
60
fastq
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
122
Homo sapiens
Biosample type
61
cell line
53
tissue
8
primary cell
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
345
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
114
AMP
8
T1D
Genome assembly (visualization)
99
hg19
98
GRCh38
Lab
114
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
DNase-seq
snATAC-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
cell line
GM12878
60
1
tissue
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 8 more…
primary cell
peripheral blood mononuclear cell
8
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