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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
84
RNA microarray
69
total RNA-seq
36
DNase-seq
15
ATAC-seq
8
snATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
126
DNA binding
69
Transcription
59
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
23
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
150
February, 2021
69
October, 2019
32
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
7
May, 2019
5
July, 2019
3
February, 2020
1
January, 2018
1
May, 2021
Available data
234
bam
204
bigWig
148
bed narrowPeak
138
bigBed narrowPeak
88
txt
65
tsv
60
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
344
Homo sapiens
Biosample type
274
tissue
61
cell line
9
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
335
AMP
9
T1D
Genome assembly (visualization)
215
hg19
210
GRCh38
Lab
335
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
344 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
snATAC-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
+ See 17 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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