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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
8
snATAC-seq
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
86
DNA binding
12
DNA accessibility
5
Transcription
Target of assay
51
transcription factor
25
histone
25
histone modification
17
control
16
broad histone mark
10
RNA binding protein
10
chromatin remodeller
narrow histone mark
Date released
34
October, 2019
27
December, 2018
17
January, 2019
15
November, 2018
8
January, 2021
1
February, 2020
1
January, 2018
Available data
93
bam
77
bigWig
72
bed narrowPeak
71
bigBed narrowPeak
59
fastq
5
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
103
Homo sapiens
Biosample type
60
cell line
35
tissue
8
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
8
T1D
Genome assembly (visualization)
77
hg19
76
GRCh38
Lab
95
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
GM12878
59
1
tissue
tibial nerve
27
5
1
2
primary cell
peripheral blood mononuclear cell
8
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