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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
8
snATAC-seq
1
ATAC-seq
1
RRBS
1
total RNA-seq
Assay category
50
DNA binding
9
DNA accessibility
1
DNA methylation
1
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
25
December, 2018
13
November, 2018
12
January, 2019
8
January, 2021
2
July, 2019
1
January, 2018
Available data
51
bam
50
fastq
46
bigWig
44
bed narrowPeak
44
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Organism
61
Homo sapiens
Biosample type
51
cell line
9
primary cell
1
tissue
Organ
946
pancreas
768
liver
682
connective tissue
523
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
53
AMP
8
T1D
Genome assembly (visualization)
47
hg19
45
GRCh38
Lab
53
AMP-T2D consortium
8
Kyle Gaulton, UCSD
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
snATAC-seq
ATAC-seq
RRBS
total RNA-seq
cell line
GM12878
50
1
primary cell
peripheral blood mononuclear cell
8
pericardium fibroblast
1
tissue
pericardium
1
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