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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
8
snATAC-seq
2
DNase-seq
1
ATAC-seq
1
FAIRE-seq
Assay category
77
DNA binding
12
DNA accessibility
3D chromatin structure
Target of assay
51
transcription factor
16
histone
16
histone modification
10
RNA binding protein
10
chromatin remodeller
9
broad histone mark
8
control
7
narrow histone mark
Date released
27
December, 2018
20
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
Available data
80
bam
70
bigWig
67
bed narrowPeak
67
bigBed narrowPeak
60
fastq
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
Organism
89
Homo sapiens
Biosample type
61
cell line
28
primary cell
Organ
937
pancreas
787
liver
683
connective tissue
516
epithelium
491
adipose tissue
353
kidney
350
heart
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
8
T1D
Genome assembly (visualization)
70
hg19
66
GRCh38
Lab
81
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
snATAC-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
GM12878
60
1
primary cell
endothelial cell of umbilical vein
17
2
1
peripheral blood mononuclear cell
8
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