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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
8
snATAC-seq
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
77
DNA binding
10
DNA accessibility
2
3D chromatin structure
Target of assay
51
transcription factor
16
histone
16
histone modification
10
RNA binding protein
10
chromatin remodeller
9
broad histone mark
8
control
7
narrow histone mark
Date released
27
December, 2018
19
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
Available data
78
bam
68
bigWig
65
bed narrowPeak
65
bigBed narrowPeak
60
fastq
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
89
Homo sapiens
Biosample type
61
cell line
28
primary cell
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
323
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
8
T1D
Genome assembly (visualization)
70
hg19
64
GRCh38
Lab
81
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
snATAC-seq
Hi-C
ATAC-seq
FAIRE-seq
cell line
GM12878
60
1
primary cell
endothelial cell of umbilical vein
17
2
1
peripheral blood mononuclear cell
8
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