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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
DNase-seq
9
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
27
DNA accessibility
9
DNA binding
Target of assay
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
18
June, 2019
8
January, 2021
4
January, 2019
3
November, 2018
2
December, 2018
1
January, 2018
Available data
27
bam
22
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
9
fastq
Organism
36
Homo sapiens
Biosample type
18
tissue
10
cell line
8
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
344
kidney
341
heart
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
8
T1D
Genome assembly (visualization)
22
hg19
21
GRCh38
Lab
28
AMP-T2D consortium
8
Kyle Gaulton, UCSD
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
36 results
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Clear Filters
DNase-seq
ChIP-seq
snATAC-seq
ATAC-seq
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
cell line
GM12878
9
1
primary cell
peripheral blood mononuclear cell
8
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