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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
26
DNA binding
9
Transcription
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
13
October, 2019
11
May, 2019
6
August, 2021
3
February, 2020
2
February, 2021
1
July, 2019
1
March, 2020
1
November, 2017
Available data
28
bam
10
tsv
4
bigWig
2
bed broadPeak
2
bigBed broadPeak
2
tagAlign
1
bed narrowPeak
1
bigBed narrowPeak
1
fastq
1
tar
Organism
38
Homo sapiens
Biosample type
27
tissue
9
primary cell
2
cell line
Organ
303
pancreas
256
liver
222
epithelium
148
kidney
124
heart
117
connective tissue
93
bone element
67
adipose tissue
66
brain
55
eye
40
vasculature
38
blood vessel
37
musculature of body
22
limb
20
lung
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
GRCh38
154
hg19
Lab
38
AMP-T2D consortium
assay_slims!
3D chromatin structure
assembly!
GRCh38
organ_slims!
blood
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
FAIRE-seq
WGBS
pCHi-C
tissue
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
7
1
brain microvascular endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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