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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
total RNA-seq
11
ATAC-seq
9
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
99
DNA binding
21
DNA accessibility
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
46
October, 2019
14
February, 2021
5
June, 2019
4
July, 2019
3
November, 2017
Available data
129
bed narrowPeak
122
bam
92
bigWig
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
7
tsv
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
122
Homo sapiens
Biosample type
83
tissue
25
primary cell
14
cell line
Organ
522
liver
353
pancreas
241
epithelium
238
brain
142
heart
133
kidney
127
vasculature
126
connective tissue
122
blood vessel
110
limb
60
blood
60
bodily fluid
53
musculature of body
48
artery
47
adipose tissue
38
nerve
24
spleen
22
embryo
20
vein
18
ureter
8
bone element
8
skeleton
7
eye
1
pituitary gland
Project
122
AMP
Genome assembly (visualization)
96
hg19
94
GRCh38
Lab
122
AMP-T2D consortium
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
tibial artery
23
1
2
ascending aorta
16
1
thoracic aorta
16
1
aorta
13
2
coronary artery
5
1
2
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
6
8
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