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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
5
DNase-seq
5
Hi-C
total RNA-seq
4
single cell RNA-seq
2
WGBS
2
pCHi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
65
DNA binding
7
DNA accessibility
5
3D chromatin structure
4
Transcription
2
DNA methylation
Target of assay
50
histone
50
histone modification
31
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
21
October, 2019
5
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
Available data
74
bam
61
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
6
tsv
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
85
Homo sapiens
Biosample type
56
tissue
29
primary cell
Organ
602
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
62
hg19
55
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
total RNA-seq
organ_slims!
artery
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
WGBS
pCHi-C
ATAC-seq
FAIRE-seq
tissue
aorta
13
1
4
2
1
ascending aorta
16
1
thoracic aorta
16
1
small intestine
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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