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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
317
ChIP-seq
198
ATAC-seq
80
single cell RNA-seq
53
WGBS
17
DNase-seq
14
Hi-C
11
snATAC-seq
10
MeRIP-seq
3
FAIRE-seq
2
Capture-C
2
RRBS
2
pCHi-C
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
198
DNA accessibility
Date released
57
May, 2022
46
February, 2023
20
November, 2019
16
May, 2021
14
September, 2018
8
February, 2021
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
4
October, 2019
3
August, 2017
3
September, 2020
2
July, 2019
Available data
110
bed narrowPeak
76
bam
56
fastq
44
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
198
Homo sapiens
Biosample type
100
tissue
71
primary cell
27
cell line
Organ
152
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
138
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
105
GRCh38
82
hg19
Lab
115
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
BIOSAMPLE
ASSAY
198 results
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Clear Filters
ATAC-seq
tissue
islet of Langerhans
58
coronary artery
36
body of pancreas
4
thoracic aorta
1
tibial artery
1
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
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