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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
26
DNA binding
9
Transcription
5
3D chromatin structure
1
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
13
October, 2019
11
May, 2019
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
2
February, 2021
1
November, 2017
Available data
28
bam
10
tsv
6
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
2
tagAlign
bed narrowPeak
1
bigBed narrowPeak
1
fastq
1
tar
Organism
42
Homo sapiens
Biosample type
28
tissue
12
primary cell
2
cell line
Organ
285
pancreas
217
epithelium
186
liver
148
kidney
126
heart
114
connective tissue
93
bone element
67
brain
65
adipose tissue
44
vasculature
42
blood vessel
29
musculature of body
28
eye
25
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
9
vein
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
66
hg19
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
7
2
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
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