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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
24
DNA binding
9
Transcription
5
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
19
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
14
October, 2019
11
May, 2019
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
1
November, 2017
Available data
28
bam
10
tsv
6
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
tagAlign
1
bed narrowPeak
1
bigBed narrowPeak
1
fastq
1
tar
Organism
41
Homo sapiens
Biosample type
28
tissue
13
primary cell
Organ
300
pancreas
228
epithelium
205
liver
149
kidney
125
heart
96
connective tissue
93
bone element
59
adipose tissue
55
eye
43
vasculature
41
blood vessel
33
brain
28
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
12
nerve
11
artery
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
GRCh38
155
hg19
Lab
41
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
FAIRE-seq
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
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primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
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