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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
2
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
30
DNA binding
9
Transcription
5
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
21
control
9
histone
9
histone modification
5
narrow histone mark
4
broad histone mark
Date released
18
October, 2019
11
May, 2019
6
August, 2021
4
March, 2020
3
February, 2020
3
July, 2019
2
February, 2021
1
November, 2017
Available data
28
bam
11
tsv
6
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
bed narrowPeak
1
bigBed narrowPeak
1
fastq
1
tar
Organism
48
Homo sapiens
Biosample type
33
tissue
13
primary cell
2
cell line
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
GRCh38
159
hg19
Lab
48
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
FAIRE-seq
WGBS
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
islet of Langerhans
4
thoracic aorta
4
+ See 3 more…
primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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