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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
56
total RNA-seq
11
ATAC-seq
5
DNase-seq
2
WGBS
Assay category
79
DNA binding
56
Transcription
16
DNA accessibility
2
DNA methylation
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
26
October, 2019
7
July, 2019
3
June, 2019
1
March, 2020
Available data
153
bam
126
bigWig
112
bed narrowPeak
66
tsv
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
153
Homo sapiens
Biosample type
87
tissue
66
cell line
primary cell
Organ
669
liver
557
connective tissue
495
pancreas
440
adipose tissue
226
brain
199
heart
153
blood vessel
153
vasculature
114
limb
113
kidney
100
artery
75
epithelium
66
bone element
60
blood
60
bodily fluid
44
musculature of body
42
nerve
36
embryo
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
153
AMP
Genome assembly (visualization)
134
GRCh38
133
hg19
Lab
153
AMP-T2D consortium
biosample_type!
primary cell
BIOSAMPLE
ASSAY
153 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
tibial artery
23
1
2
thoracic aorta
16
2
1
ascending aorta
16
1
1
aorta
13
1
2
coronary artery
5
1
2
cell line
smooth muscle cell of the coronary artery
6
52
8
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