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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
59
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
2
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
65
Transcription
48
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
June, 2019
3
March, 2020
Available data
150
bam
123
bigWig
109
bed narrowPeak
66
tsv
59
bigBed narrowPeak
6
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
196
Homo sapiens
Biosample type
130
tissue
66
cell line
primary cell
Organ
777
liver
644
connective tissue
596
pancreas
488
adipose tissue
313
heart
250
kidney
240
brain
196
blood vessel
196
vasculature
158
bone element
137
artery
118
epithelium
90
limb
61
blood
61
bodily fluid
53
eye
50
musculature of body
43
nerve
37
embryo
25
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
196
AMP
Genome assembly (visualization)
166
GRCh38
131
hg19
Lab
196
AMP-T2D consortium
biosample_type!
primary cell
month_released!
June, 2019
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
1
36
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
thoracic aorta
16
2
1
ascending aorta
16
2
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cell line
smooth muscle cell of the coronary artery
6
52
8
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