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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
83
total RNA-seq
74
single cell RNA-seq
71
ATAC-seq
47
WGBS
7
Hi-C
4
DNase-seq
1
FAIRE-seq
Assay category
157
Transcription
90
DNA binding
76
DNA accessibility
47
DNA methylation
7
3D chromatin structure
Target of assay
74
histone
74
histone modification
38
narrow histone mark
36
broad histone mark
15
control
1
RNA binding protein
1
transcription factor
Date released
80
May, 2022
72
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
21
October, 2019
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
4
July, 2019
3
August, 2018
3
November, 2017
3
October, 2022
2
June, 2019
2
October, 2018
1
June, 2018
1
March, 2020
Available data
261
fastq
221
bam
216
bigWig
110
tsv
85
bed narrowPeak
80
zippedFastqFolder
39
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
377
Homo sapiens
Biosample type
638
tissue
377
primary cell
158
cell line
3
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
225
AMP
152
HPAP
Genome assembly (visualization)
210
GRCh38
210
hg19
Lab
225
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
377 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
Hi-C
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
13
52
12
35
31
1
pancreatic beta cell
13
21
12
23
16
1
pancreatic acinar cell
8
4
12
9
1
pancreatic ductal cell
13
4
10
4
pancreatic endocrine cell
23
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