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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
4
Hi-C
2
total RNA-seq
Assay category
8
DNA binding
4
3D chromatin structure
2
Transcription
Target of assay
5
histone
5
histone modification
4
broad histone mark
3
control
1
narrow histone mark
Date released
8
October, 2019
4
July, 2019
1
March, 2020
1
November, 2017
Available data
27
bam
24
bigWig
17
bed narrowPeak
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
3
fastq
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
14
Homo sapiens
Biosample type
71
tissue
66
cell line
14
primary cell
Organ
345
epithelium
324
pancreas
24
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
14
AMP
Genome assembly (visualization)
9
hg19
2
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
14 results
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ChIP-seq
Hi-C
total RNA-seq
primary cell
endothelial cell of umbilical vein
7
2
brain microvascular endothelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
smooth muscle cell of the coronary artery
1
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