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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
pCHi-C
Assay category
35
DNA accessibility
9
Transcription
5
3D chromatin structure
Date released
35
February, 2023
6
August, 2021
3
February, 2020
2
July, 2019
2
March, 2020
1
October, 2019
Available data
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
67
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
49
Homo sapiens
Biosample type
45
tissue
4
primary cell
Organ
256
pancreas
208
kidney
207
epithelium
139
heart
107
liver
92
bone element
87
connective tissue
50
eye
50
vasculature
49
blood vessel
47
adipose tissue
41
brain
39
artery
38
musculature of body
19
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
4
gonad
4
ovary
2
vein
1
embryo
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
49
AMP
Genome assembly (visualization)
35
GRCh38
5
hg19
Lab
49
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
49 results
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Clear Filters
ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
tissue
coronary artery
35
1
aorta
4
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
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