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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
5
Hi-C
total RNA-seq
1
pCHi-C
Assay category
35
DNA accessibility
6
Transcription
5
3D chromatin structure
Date released
35
February, 2023
6
August, 2021
3
March, 2020
2
July, 2019
1
October, 2019
Available data
129
bed narrowPeak
bam
92
bigWig
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
7
tsv
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
47
Homo sapiens
Biosample type
43
tissue
4
primary cell
Organ
190
pancreas
161
kidney
152
epithelium
139
heart
89
bone element
84
connective tissue
80
liver
48
vasculature
47
blood vessel
46
adipose tissue
37
artery
37
musculature of body
35
eye
31
brain
20
lung
9
blood
9
bodily fluid
5
gonad
5
limb
5
ovary
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
35
GRCh38
5
hg19
Lab
47
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
47 results
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Clear Filters
ATAC-seq
single cell RNA-seq
Hi-C
pCHi-C
tissue
coronary artery
35
aorta
4
1
1
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
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