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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
3
total RNA-seq
2
Hi-C
pCHi-C
Assay category
35
DNA accessibility
9
Transcription
2
3D chromatin structure
Date released
35
February, 2023
6
August, 2021
3
February, 2020
2
July, 2019
Available data
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
67
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
46
Homo sapiens
Biosample type
44
tissue
2
primary cell
Organ
249
pancreas
207
kidney
201
epithelium
176
heart
105
liver
92
bone element
87
connective tissue
50
eye
47
adipose tissue
47
vasculature
46
blood vessel
41
brain
39
artery
36
musculature of body
19
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
4
gonad
4
ovary
1
embryo
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
46
AMP
Genome assembly (visualization)
35
GRCh38
2
hg19
Lab
46
AMP-T2D consortium
files.file_type!
bam
hic
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
46 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
Hi-C
tissue
coronary artery
35
1
aorta
4
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
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