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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
35
DNA accessibility
9
Transcription
3
3D chromatin structure
Date released
35
February, 2023
6
August, 2021
3
February, 2020
3
March, 2020
1
October, 2019
Available data
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
68
tsv
13
bed broadPeak
13
bigBed broadPeak
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
48
Homo sapiens
Biosample type
46
tissue
2
primary cell
Organ
256
pancreas
210
kidney
205
epithelium
142
heart
108
liver
93
bone element
84
connective tissue
54
eye
49
adipose tissue
49
vasculature
48
blood vessel
40
brain
39
artery
38
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
35
GRCh38
3
hg19
Lab
48
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
bed bed3+
BIOSAMPLE
ASSAY
48 results
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ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
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