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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
5
DNase-seq
5
total RNA-seq
4
single cell RNA-seq
3
Hi-C
2
WGBS
2
pCHi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
69
DNA binding
9
Transcription
7
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
54
histone
54
histone modification
31
broad histone mark
23
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
25
October, 2019
8
July, 2019
4
August, 2021
3
June, 2019
3
March, 2020
3
November, 2017
1
February, 2020
Available data
78
bam
65
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
11
tsv
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
92
Homo sapiens
Biosample type
64
tissue
28
primary cell
Organ
939
pancreas
789
liver
683
connective tissue
519
epithelium
490
adipose tissue
390
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
64
hg19
59
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bedpe bed3+
organ_slims!
artery
BIOSAMPLE
ASSAY
92 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
ATAC-seq
FAIRE-seq
tissue
aorta
13
1
4
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
islet of Langerhans
4
ovary
1
primary cell
endothelial cell of umbilical vein
17
2
1
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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