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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
15
single cell RNA-seq
10
snATAC-seq
3
Hi-C
3
total RNA-seq
2
pCHi-C
Assay category
45
DNA accessibility
18
Transcription
3
3D chromatin structure
Date released
35
February, 2023
19
April, 2020
6
August, 2021
3
February, 2020
2
July, 2019
2
March, 2020
1
October, 2019
Available data
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
69
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
67
Homo sapiens
Biosample type
65
tissue
3
primary cell
Organ
250
pancreas
210
kidney
202
epithelium
179
heart
108
liver
93
bone element
90
connective tissue
54
eye
49
vasculature
48
adipose tissue
48
blood vessel
43
brain
39
artery
37
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
49
AMP
19
LungMap
Genome assembly (visualization)
35
GRCh38
3
hg19
Lab
49
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
audit script error
files.file_type!
bedpe bed3+
bam
BIOSAMPLE
ASSAY
68 results
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ATAC-seq
single cell RNA-seq
snATAC-seq
Hi-C
total RNA-seq
pCHi-C
tissue
coronary artery
35
1
lung
9
10
1
aorta
4
1
pulmonary artery
2
ascending aorta
1
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primary cell
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
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