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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
35
DNA accessibility
9
Transcription
5
3D chromatin structure
Date released
35
February, 2023
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
1
October, 2019
Available data
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
68
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
bigBed bedMethyl
1
tar
Organism
50
Homo sapiens
Biosample type
46
tissue
4
primary cell
Organ
255
pancreas
206
kidney
201
epithelium
140
heart
108
liver
93
bone element
90
connective tissue
53
eye
50
blood vessel
50
vasculature
49
adipose tissue
41
brain
39
artery
36
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
35
GRCh38
5
hg19
Lab
50
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed bedMethyl
bam
BIOSAMPLE
ASSAY
50 results
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ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
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