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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
17
DNA binding
9
Transcription
5
3D chromatin structure
2
DNA methylation
1
DNA accessibility
Target of assay
12
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
9
May, 2019
8
July, 2019
8
October, 2019
4
August, 2021
4
March, 2020
1
February, 2020
1
November, 2017
Available data
78
bam
65
bigWig
55
bed narrowPeak
bigBed narrowPeak
10
tsv
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
35
Homo sapiens
Biosample type
23
tissue
12
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
259
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
13
hg19
6
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed narrowPeak
organ_slims!
artery
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
pCHi-C
tissue
aorta
2
1
1
4
2
1
thoracic aorta
4
2
1
ascending aorta
3
2
primary cell
endothelial cell of umbilical vein
7
2
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
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