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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
46
ATAC-seq
22
ChIP-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
66
Transcription
46
DNA accessibility
22
DNA binding
2
DNA methylation
1
3D chromatin structure
Target of assay
18
control
4
transcription factor
Date released
66
February, 2021
35
February, 2023
11
May, 2019
8
July, 2019
6
August, 2021
6
October, 2019
3
February, 2020
3
March, 2020
Available data
154
bam
127
bigWig
112
bed narrowPeak
67
tsv
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
138
Homo sapiens
Biosample type
71
tissue
66
cell line
1
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
epithelium
433
liver
259
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
138
AMP
Genome assembly (visualization)
108
GRCh38
73
hg19
Lab
138
AMP-T2D consortium
files.file_type!
bigBed narrowPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
138 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
1
36
2
aorta
1
2
4
2
1
1
thoracic aorta
2
1
4
tibial artery
1
1
5
ascending aorta
2
3
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cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
smooth muscle cell of the coronary artery
1
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