Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
total RNA-seq
46
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
99
DNA binding
56
DNA accessibility
6
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
47
October, 2019
35
February, 2023
14
February, 2021
6
August, 2021
5
June, 2019
4
July, 2019
3
March, 2020
3
November, 2017
Available data
129
bed narrowPeak
122
bam
92
bigWig
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
7
tsv
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
167
Homo sapiens
Biosample type
126
tissue
27
primary cell
14
cell line
Organ
601
liver
542
pancreas
391
epithelium
294
kidney
281
heart
266
brain
209
connective tissue
173
vasculature
167
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
167
AMP
Genome assembly (visualization)
129
GRCh38
99
hg19
Lab
167
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
hdf5
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
167 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
4
1
2
1
ascending aorta
16
1
thoracic aorta
16
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
6
8
See all biosamples
Download