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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
230
total RNA-seq
6
single cell RNA-seq
3
pCHi-C
3
small RNA-seq
Assay category
239
Transcription
Date released
144
May, 2020
52
February, 2021
15
August, 2021
12
July, 2019
5
December, 2019
5
January, 2019
4
February, 2020
4
March, 2020
1
October, 2019
Available data
861
bam
771
bigWig
570
bed narrowPeak
468
fastq
437
bigBed narrowPeak
242
tsv
92
tagAlign
76
bed broadPeak
76
bigBed broadPeak
23
bed bed3+
5
hic
4
bed bedMethyl
4
bedpe bed3+
4
bigBed bedMethyl
4
tar
2
hdf5
1
bed bed3
1
csv
1
vcf
Organism
242
Homo sapiens
Biosample type
168
tissue
67
cell line
7
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
242
AMP
Genome assembly (visualization)
220
GRCh38
220
hg19
Lab
233
AMP-T2D consortium
9
Bing Ren, UCSD
BIOSAMPLE
ASSAY
242 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
tissue
liver
147
1
1
aorta
1
4
1
right lobe of liver
3
2
ascending aorta
2
pulmonary artery
2
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
52
HepG2
14
1
primary cell
hepatocyte
5
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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