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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
4
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
20
DNA binding
5
DNA accessibility
2
3D chromatin structure
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
21
October, 2019
July, 2019
3
November, 2017
2
June, 2019
1
March, 2020
Available data
25
bam
20
bigWig
17
bed narrowPeak
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
4
bed bed3+
3
fastq
2
hic
1
bedpe bed3+
1
tar
Organism
27
Homo sapiens
Biosample type
126
tissue
66
cell line
27
primary cell
Organ
393
epithelium
346
pancreas
32
vasculature
31
connective tissue
29
kidney
27
blood vessel
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
27
AMP
Genome assembly (visualization)
21
hg19
16
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
July, 2019
organ_slims!
gonad
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
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