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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
56
total RNA-seq
44
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
74
DNA binding
62
Transcription
54
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
66
February, 2021
37
October, 2019
36
May, 2019
35
February, 2023
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
2
November, 2017
Available data
146
bam
116
bigWig
103
bed narrowPeak
63
tsv
55
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
hic
2
bedpe bed3+
2
fastq
1
tar
Organism
194
Homo sapiens
Biosample type
108
tissue
66
cell line
20
primary cell
Organ
867
pancreas
721
liver
633
connective tissue
467
adipose tissue
462
epithelium
328
kidney
303
heart
198
vasculature
194
blood vessel
159
bone element
151
brain
132
artery
102
limb
73
musculature of body
68
blood
68
bodily fluid
57
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
194
AMP
Genome assembly (visualization)
155
GRCh38
126
hg19
Lab
194
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
July, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
194 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
3
1
35
2
tibial artery
19
1
1
2
aorta
9
1
4
1
1
ascending aorta
12
1
1
thoracic aorta
12
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
11
2
2
1
brain microvascular endothelial cell
2
1
kidney capillary endothelial cell
1
See all biosamples
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