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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
5
DNase-seq
5
total RNA-seq
4
single cell RNA-seq
3
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
65
DNA binding
9
Transcription
7
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
50
histone
50
histone modification
31
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
21
October, 2019
6
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
1
February, 2020
Available data
78
bam
65
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
10
tsv
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
87
Homo sapiens
Biosample type
60
tissue
27
primary cell
Organ
945
pancreas
790
liver
683
connective tissue
522
epithelium
491
adipose tissue
354
kidney
353
heart
283
brain
234
vasculature
228
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
64
hg19
59
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
artery
files.file_type!
hdf5
BIOSAMPLE
ASSAY
87 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
13
1
4
1
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
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