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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
60
total RNA-seq
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
66
Transcription
5
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
58
February, 2021
50
May, 2019
25
October, 2019
6
August, 2021
6
July, 2019
3
February, 2020
3
June, 2019
3
March, 2020
Available data
143
bam
124
bigWig
67
tsv
66
bed narrowPeak
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
154
Homo sapiens
Biosample type
95
tissue
58
cell line
1
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
154
AMP
Genome assembly (visualization)
124
GRCh38
124
hg19
Lab
154
AMP-T2D consortium
organ_slims!
epithelium
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
tibial artery
23
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
coronary artery
5
1
2
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
primary cell
smooth muscle cell of the coronary artery
1
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