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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
66
total RNA-seq
53
ATAC-seq
39
DNase-seq
6
single cell RNA-seq
5
Hi-C
3
WGBS
1
pCHi-C
Assay category
122
DNA binding
92
DNA accessibility
72
Transcription
5
3D chromatin structure
3
DNA methylation
Target of assay
85
histone
85
histone modification
56
broad histone mark
30
control
29
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
72
February, 2021
69
October, 2019
57
May, 2019
35
February, 2023
35
June, 2019
13
July, 2019
6
August, 2021
5
February, 2020
3
March, 2020
Available data
242
bam
197
bigWig
183
bed narrowPeak
126
bigBed narrowPeak
73
tsv
39
bed bed3+
39
bed broadPeak
39
bigBed broadPeak
6
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
295
Homo sapiens
Biosample type
228
tissue
66
cell line
1
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
295
AMP
Genome assembly (visualization)
245
GRCh38
210
hg19
Lab
295
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
295 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
tissue
coronary artery
5
1
36
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
aorta
13
1
4
1
2
1
muscle of leg
7
13
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the coronary artery
1
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