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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
88
DNA binding
12
Transcription
5
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
68
histone
68
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
43
October, 2019
8
July, 2019
6
August, 2021
4
March, 2020
3
November, 2017
2
February, 2020
Available data
97
bam
79
bigWig
69
bed narrowPeak
67
bigBed narrowPeak
13
tsv
4
bed broadPeak
4
bigBed broadPeak
3
fastq
3
hic
2
bed bed3+
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
111
Homo sapiens
Biosample type
86
tissue
25
primary cell
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
111
AMP
Genome assembly (visualization)
81
hg19
73
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
heart
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial artery
23
1
1
aorta
13
4
1
1
2
1
thoracic aorta
16
2
1
ascending aorta
16
2
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
endothelial cell of hepatic sinusoid
1
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