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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
7
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
88
DNA binding
12
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
68
histone
68
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
46
October, 2019
45
May, 2019
6
August, 2021
6
July, 2019
3
June, 2019
3
November, 2017
2
February, 2020
2
March, 2020
Available data
104
bam
84
bigWig
76
bed narrowPeak
74
bigBed narrowPeak
13
tsv
11
bed broadPeak
11
bigBed broadPeak
7
bed bed3+
3
fastq
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
113
Homo sapiens
Biosample type
88
tissue
25
primary cell
Organ
937
pancreas
787
liver
683
connective tissue
516
epithelium
491
adipose tissue
353
kidney
heart
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
113
AMP
Genome assembly (visualization)
82
hg19
80
GRCh38
Lab
113
AMP-T2D consortium
organ_slims!
heart
assay_title!
Hi-C
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial artery
23
2
1
1
aorta
13
4
1
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
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