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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
pCHi-C
Assay category
22
DNA binding
12
Transcription
5
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
17
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
14
October, 2019
9
May, 2019
8
July, 2019
6
August, 2021
4
March, 2020
2
February, 2020
1
November, 2017
Available data
104
bam
86
bigWig
76
bed narrowPeak
bigBed narrowPeak
13
tsv
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
44
Homo sapiens
Biosample type
32
tissue
12
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
14
hg19
7
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
heart
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
44 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
pCHi-C
tissue
aorta
2
4
1
1
2
1
thoracic aorta
4
2
1
tibial artery
5
1
1
ascending aorta
3
2
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
7
2
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
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