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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
7
DNase-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
Assay category
88
DNA binding
10
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
68
histone
68
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
47
October, 2019
45
May, 2019
5
July, 2019
3
June, 2019
3
November, 2017
2
March, 2020
Available data
104
bam
86
bigWig
76
bed narrowPeak
74
bigBed narrowPeak
tsv
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
105
Homo sapiens
Biosample type
76
tissue
29
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
105
AMP
Genome assembly (visualization)
83
hg19
76
GRCh38
Lab
105
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
heart
files.file_type!
tsv
BIOSAMPLE
ASSAY
105 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
tissue
tibial artery
23
2
1
ascending aorta
16
1
thoracic aorta
16
1
aorta
13
1
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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