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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
7
DNase-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
Assay category
20
DNA binding
10
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
68
histone
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
14
October, 2019
11
May, 2019
5
July, 2019
3
June, 2019
2
March, 2020
2
November, 2017
Available data
36
bam
21
bigWig
13
bed narrowPeak
tsv
11
bigBed narrowPeak
9
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
3
hic
2
bedpe bed3+
2
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
37
Homo sapiens
Biosample type
24
tissue
13
primary cell
Organ
514
liver
378
pancreas
300
kidney
275
epithelium
128
connective tissue
heart
101
bone element
97
vasculature
92
blood vessel
73
brain
68
blood
68
bodily fluid
66
limb
63
artery
58
adipose tissue
54
musculature of body
53
eye
19
lung
18
spleen
18
ureter
16
skeleton
14
nerve
11
embryo
7
vein
1
bone marrow
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
37
AMP
Genome assembly (visualization)
18
hg19
13
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
heart
files.file_type!
tsv
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
DNase-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
tissue
tibial artery
5
2
1
thoracic aorta
5
1
aorta
2
1
2
ascending aorta
4
1
primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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