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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
7
DNase-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
88
DNA binding
10
DNA accessibility
6
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
68
histone
68
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
47
October, 2019
45
May, 2019
8
July, 2019
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
2
February, 2020
Available data
104
bam
86
bigWig
76
bed narrowPeak
74
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
7
tsv
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
112
Homo sapiens
Biosample type
83
tissue
29
primary cell
Organ
942
pancreas
756
liver
679
connective tissue
518
epithelium
490
adipose tissue
286
brain
heart
230
vasculature
224
blood vessel
224
kidney
159
bone element
139
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
87
hg19
80
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
heart
month_released!
August, 2021
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial artery
23
2
1
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
aorta
13
1
1
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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