Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
6
single cell RNA-seq
6
total RNA-seq
4
Hi-C
3
DNase-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
48
DNA binding
12
Transcription
4
3D chromatin structure
4
DNA accessibility
2
DNA methylation
Target of assay
35
histone
35
histone modification
22
broad histone mark
13
narrow histone mark
10
control
3
RNA binding protein
3
transcription factor
Date released
October, 2019
45
May, 2019
8
July, 2019
6
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
2
February, 2020
Available data
58
bam
50
bigWig
42
bed narrowPeak
41
bigBed narrowPeak
13
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
fastq
2
bedpe bed3+
2
hdf5
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
Organism
71
Homo sapiens
Biosample type
63
tissue
8
primary cell
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
71
AMP
Genome assembly (visualization)
50
hg19
47
GRCh38
Lab
71
AMP-T2D consortium
organ_slims!
heart
month_released!
October, 2019
BIOSAMPLE
ASSAY
71 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
DNase-seq
WGBS
ATAC-seq
pCHi-C
tissue
aorta
13
4
1
1
2
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
pulmonary artery
2
tibial artery
1
primary cell
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
kidney capillary endothelial cell
1
Download