Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
7
DNase-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
20
DNA binding
10
DNA accessibility
6
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
histone
68
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
14
October, 2019
11
May, 2019
8
July, 2019
August, 2021
4
March, 2020
3
June, 2019
2
February, 2020
2
November, 2017
Available data
36
bam
21
bigWig
13
bed narrowPeak
11
bigBed narrowPeak
9
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
tsv
3
hic
2
bedpe bed3+
2
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
44
Homo sapiens
Biosample type
31
tissue
13
primary cell
Organ
791
pancreas
660
liver
601
connective tissue
458
adipose tissue
428
epithelium
heart
194
kidney
159
bone element
159
vasculature
154
blood vessel
119
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
20
lung
19
nerve
19
spleen
18
ureter
17
embryo
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
22
hg19
17
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
heart
month_released!
August, 2021
target.investigated_as!
histone
BIOSAMPLE
ASSAY
44 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial artery
5
2
1
1
thoracic aorta
5
2
1
aorta
2
1
1
2
1
ascending aorta
4
1
2
primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
Download