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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
84
RNA microarray
68
total RNA-seq
14
ATAC-seq
7
DNase-seq
6
single cell RNA-seq
5
Hi-C
2
WGBS
2
pCHi-C
1
FAIRE-seq
Assay category
88
DNA binding
74
Transcription
22
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
68
histone
68
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
150
February, 2021
47
October, 2019
45
May, 2019
8
February, 2023
8
July, 2019
6
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
2
February, 2020
1
May, 2021
Available data
170
bam
144
bigWig
88
txt
84
bed narrowPeak
74
bigBed narrowPeak
71
tsv
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
4
bed bed3
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
277
Homo sapiens
Biosample type
247
tissue
30
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
276
AMP
1
T1D
Genome assembly (visualization)
157
hg19
146
GRCh38
Lab
276
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
organ_slims!
heart
BIOSAMPLE
ASSAY
277 results
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ChIP-seq
RNA microarray
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
FAIRE-seq
tissue
bone element
84
bone tissue
58
tibial artery
23
1
1
2
aorta
13
1
4
1
2
1
ascending aorta
16
2
1
+ See 14 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
megakaryocyte
1
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