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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
46
ATAC-seq
8
DNase-seq
5
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
99
DNA binding
Transcription
55
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
47
October, 2019
35
February, 2023
14
February, 2021
6
July, 2019
4
June, 2019
3
March, 2020
3
November, 2017
Available data
128
bed narrowPeak
121
bam
91
bigWig
78
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
10
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
1
tsv
Organism
162
Homo sapiens
Biosample type
120
tissue
28
primary cell
14
cell line
Organ
598
liver
467
pancreas
323
epithelium
262
brain
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
162
AMP
Genome assembly (visualization)
128
GRCh38
101
hg19
Lab
162
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
kidney
assay_slims!
Transcription
BIOSAMPLE
ASSAY
162 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
1
2
1
ascending aorta
16
1
thoracic aorta
16
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
6
8
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