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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
46
ATAC-seq
7
DNase-seq
3
Hi-C
2
WGBS
1
pCHi-C
Assay category
82
DNA binding
Transcription
53
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
55
histone
55
histone modification
36
broad histone mark
19
control
19
narrow histone mark
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
35
February, 2023
26
October, 2019
14
February, 2021
6
July, 2019
5
June, 2019
3
November, 2017
2
March, 2020
Available data
116
bed narrowPeak
102
bam
77
bigWig
66
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
tagAlign
3
fastq
2
hdf5
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tsv
Organism
141
Homo sapiens
Biosample type
120
tissue
14
cell line
7
primary cell
Organ
598
liver
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
141
AMP
Genome assembly (visualization)
117
GRCh38
84
hg19
Lab
141
AMP-T2D consortium
organ_slims!
pancreas
vein
assay_slims!
Transcription
BIOSAMPLE
ASSAY
141 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
1
2
1
ascending aorta
16
1
thoracic aorta
16
1
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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