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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
6
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
4
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
85
DNA binding
12
Transcription
9
DNA accessibility
4
3D chromatin structure
2
DNA methylation
Target of assay
67
histone
67
histone modification
45
broad histone mark
22
narrow histone mark
16
control
2
RNA binding protein
2
transcription factor
Date released
47
October, 2019
45
May, 2019
7
July, 2019
6
August, 2021
4
March, 2020
2
February, 2020
2
June, 2019
Available data
100
bam
81
bigWig
73
bed narrowPeak
71
bigBed narrowPeak
13
tsv
8
bed broadPeak
8
bigBed broadPeak
7
bed bed3+
3
hic
2
bedpe bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tar
Organism
113
Homo sapiens
Biosample type
89
tissue
24
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
heart
354
kidney
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
113
AMP
Genome assembly (visualization)
82
hg19
77
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
small intestine
brain
heart
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial artery
23
2
1
1
aorta
13
4
1
1
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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