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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ATAC-seq
8
snATAC-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
44
DNA accessibility
9
Transcription
5
3D chromatin structure
Date released
35
February, 2023
8
January, 2021
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
1
January, 2018
1
October, 2019
Available data
bam
205
bigWig
183
bed narrowPeak
133
bigBed narrowPeak
68
tsv
63
fastq
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
59
Homo sapiens
Biosample type
46
tissue
12
primary cell
1
cell line
Organ
257
pancreas
210
kidney
207
epithelium
142
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
51
AMP
8
T1D
Genome assembly (visualization)
35
GRCh38
6
hg19
Lab
51
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
59 results
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ATAC-seq
snATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
cell line
GM12878
1
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